Pipeline Catalog

Analysis Pipelines

Each pipeline is validated against clinical neuroimaging standards. New analysis modules are added by appending a single JSON object to our manifest — no code changes required.

Available

~6–8h

T1 Volumetric (FreeSurfer)

Automated cortical parcellation and subcortical segmentation from T1-weighted MRI.

Structural MRIT1wCortical ThicknessSegmentation

Accepts: DICOM (.zip), NIfTI (.nii, .nii.gz)

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Coming Soon

~2–4h

DTI Tractography (FSL)

White matter fiber tractography from diffusion-weighted MRI using FSL's FDT toolbox.

Diffusion MRIDTIWhite MatterTractography

Accepts: DICOM (.zip), NIfTI (.nii, .nii.gz)

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Extensibility: New pipelines appear here automatically when added to data/pipelines.json. No code changes required.